No.
No it is not.
While it's true that Starfleet has military responsibilities, that fundamentally is not what it is supposed to be. Real militaries wouldn't have to be careful not to look to militarized, while at the same time required to perform a minimum amount of science. Placing the defense of the Federation above Starfleet's goal "to explore strange new worlds, to seek out new life and new civilizations, to boldly go where no one has gone before" is literally what got our predecessor canned.
Note that advocating a return to that policy is therefore effectively an attempt to sabotage the quest for the rest of us – even if you do it with the best of intentions – so please don't.
I'd advocate taking everyone who is unable to implement the Challorn Protocol out of the region and instead placing them in a doctrine team whose initial research goals include "how can we prevent this from happening again." Coming down to hard on him would scare off others who would act similarly from coming forward, and so endanger more lives.