The real reason the Biophage didn't adapt is because it was debatably sapient, even if it was very good at doing what it was probably created to do. I remember it's attempts to fake communications were very shoddy beyond a basic level. It certainly wasn't smart enough to deliberately genetically engineer new strains of itself to get around the vaccine, and luckily it did not have the capacity to do so naturally. The Singers created themselves, and they run a very scientifically advanced polity, so it's fair to say they can meet us technobabble to technobabble.This is actually false. We've always suspected some Biophage survived the battle of Kadesh, or was simply not in the system during the fight. We even had an event a few years later where we and the Romulans intercepted a small shuttle that was infected and destroyed it. That's why the vaccine was so important. Pretty sure Nash said afterwards that the development of the vaccine was significantly more important when it came to ending the crisis than the battle of Kadesh was. So yeah, using the Biophage crisis as our model of succesful crisis resolution, a science solution is exactly what we should be going for. Obviously not going to be easy, but doable.
Realistically, with the Singers ability to hide in and manipulate computer networks, the chance of us managing to find and capture every single one of them is low. And how would we even know we had captured them all if we did. Totally within reason for one to stay dormant for decades or even centuries to avoid notice. They are physically immune to aging, no reason one of them wouldn't adopt that as a backup plan if their regime collapsed. The best way to resolve the crisis is to nullify their ability to do harm.
As another point of comparison, we didn't kill all the full mentats when we ended the Arcadian War. We just changed protocols so that they were restricted to theoretical models only and weren't given unlimited access to dangerous equipment. That and restricting the process to the partial mentat stage meant that mentats were still around, but their ability to cause major damage was gone.
Edit: Couldn't find the exact quote I was looking for, but here's one from Nash's report in the final month of the crisis.
"We are still stationed in the Kadesh system, running down every sensor ghost and cleaning up pockets of Biophage. Given the number of pockets, I am, regrettably, almost positive that some of the Biophage has escaped. There is simply no longer enough hulls to properly account for them."
Mentats honestly aren't the finest example because, well, there's actually already a structure in Licori society meant to contain Mentats. We know this because they would have certainly blown up Morshadd before we met them if that wasn't the case. This structure was failing at the time only because of what amounted to political nonsense, once the war ended the Licori did what we wanted them to more or less on their own.
There is no Singer containment bureau, the Singers run all the bureus, the only people Singers listen to are other Singers. And when a Singer disagrees with the rest and is caught, the things we know are done to that Singer are not what we'd call Federation approved anyway.
The Singers are also a fair bit more coordinated and used to working together than Mentats, who're maniacal scientists with all that entails.
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