Okay, finally after I don't know how long since I last looked at this thread I caught up with the story! I skipped the discussions (and by extension, Omakes) though, because I didn't have patience for that.
Anyway, good to see things are being revealed to everyone who needs to know.
Now, to my comments on the story itself: I'm quite interested in seeing how Misato will react to her biggest test yet, accepting Kaworu as an Angel, considering most if not all of her adult life was spent fighting for revenge against the Angels. When she learns it, she will have to choose between vengeance and the Children she has been protecting for about... two years in-universe now? And this can't be easy for her. I am excited to see how Stripgia will tackle that issue.
Also, I've thought of a joke Asuka can use to tease Rei when, y'know, they aren't in very real life-threatening danger: considering Rei is technically (the reincarnation of) the Mother of All Life in the planet, does that make Rei the MILFest of MILFs?