What, are you expecting her to get dog-piled by Butcher|Lung, the Sleeper and the Blasphemies? On top of being a Shaker 9, which by itself is serious business, she's probably a Brute 5 and Blaster 5 now, and that's me very tentatively low-balling it. She uses her space-warping on her shield when it's deployed, or on her particle cannon and she becomes considerably more dangerous and difficult to hurt, and she was already the kind of Parahuman that you shell from a distance with an artillery barrage. Arguably, she could be considered a lightning bruiser now with a dash of Diet Purity ™ for added flavor. That's not a combo you tangle with lightly.
Or to put it simply, I'm not particularly worried even if she came face to face with Bakuda. Thomas's hired guns would likely get wrecked unless they have Parahuman support, and at the very least, Missy would be a nightmarish harasser until Taylor and Samantha teleported to her for reinforcement. Not many canon Parahumans are as effective as she is now at all-range combat.