-[] Separation 1: Those Who Surrender versus those who are merely captured. Those who surrender are not pure, and are still responsible for their crimes, but can be trusted more than those captured. Those captured will need to be considered Prisoners of War of High Danger and should be carefully watched and guarded, though even the worst prisoner is to have food and medical care, until or unless it is decided that they are to be executed by firing squad.
-[] Separation 2: By task or deed. Those who fought in the name of Chaos, or who were especially eager in slaughter must be separated from either the reluctant or those who, fundamentally, were not important.
-[] Separation 3: Among them. It is the case that if you have 500 sinners in one community, you have a community of sinners. Instead for those who willingly surrendered and who have not been found to have committed the most vile deeds, we will create Repentance Communities, places where those who wish to redeem the lost and make them Found again. By mixing the faithful and the faithless, and creating a model Star Child town, complete with plenty of chapels... and yet also having it being guarded by the fiercely faithful against subversion, we can give these people a taste of the Federation life: food, medical care, houses and all other Quality of Life amenities equal to that of any citizen of the Federation. To those who were captured or who did greater evils, we must keep them spread out. That is to say, a Repentance Community might have 200 such Chaos people and as many or more good Glimmering Federation Citizens devoted to the cause. But for those who either went too far (but not so far as to be executed) or who had to be captured should be held such that there are no more than a dozen at any location, the better to individually monitor them.
-[] Separation 4: Separation by Inquisition. Those left over, those who fall into the cracks, are to be investigated and tried. Those found too guilty or too corrupted are to be executed, but if there is a chance to save them without granting dishonor to their victims, it must be investigated. Therefore let it be that those Orders and groups involved in this Inquisition must come not only from those preaching Mercy, or Justice, but from those who believe in both.
-[] Separation 5: Time. Conversion can be forced, and may have to be, but it also takes time for faith to take root in the heart. At the end of each year, those in all of the categories are to be evaluated, those doing well and Finding Faith potentially to be moved up, those who are backsliding to be pulled away such that they cannot help others backslide, with the ultimate goal that all who can be saved... and who are WILLING to be saved, will one day be full-citizens released from the Repentence Commuities.
Maybe this or something?