So, you're arguing that despite us rolling well on each attempt to loot Klyssar station, one of our loots will instantly break out and take over the base unless we do nothing but warptech research this turn? That it will iterate faster than we can even notice despite taking some paranoia level precautions, showing fundamental abilities far beyond what it displayed up until now, and we won't even be allowed to react to this happening until it's fucked something up beyond all possible salvaging? Unless we take your specific set of research or blow it up right now, apparently.
Then we might as well give up now, because we'll never, ever manage to beat Scrap Code or even be able to meaningfully resist it, because a single generator apparently has more RP and action economy than we do, when we spent huge amounts of energy buying up our protections and ability to iterate, and spent even further resources to make damn sure it wouldn't be able to instantly break out or call on power from outside.
The very idea that this thing is capable to research is dubious to me, it's a random chaos bug not a greater daemon of Tzeench. A random navigator house was able to keep it contained away from the station's machine spirits well enough for it to serve as a guard dog.